Damianyangyang

grabseqs sra -l PRJDB5400 pigz not found, using gzip Traceback (most recent call last): File "/home/tools/anaconda3/bin/grabseqs", line 8, in <module> sys.exit(main()) File "/home/tools/anaconda3/lib/python3.8/site-packages/grabseqslib/__init__.py", line 58, in main metadata_agg = process_sra(args, zip_func) File "/home/tools/anaconda3/lib/python3.8/site-packages/grabseqslib/sra.py", line 27, in process_sra acclist, metadata_agg = get_sra_acc_metadata(sra_identifier, File "/home/tools/anaconda3/lib/python3.8/site-packages/grabseqslib/sra.py", line 97, in get_sra_acc_metadata run_col = lines[0].index("Run") ValueError: 'Run' is not in list

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when I use the command "grabseqs sra -l PRJDB5400", I have some errors. pigz not found, using gzip Traceback (most recent call last): File "/home/tools/anaconda3/bin/grabseqs", line 8, in sys.exit(main()) File...

Hi~,I have some problem~ 1../argoap_pipeline_stageone_version2.3 -i /home/bioinfo/sunyy/work/CRC/WGS/PRJEB27928/input -o /home/bioinfo/sunyy/work/CRC/WGS/PRJEB27928/11out -m /home/bioinfo/sunyy/work/CRC/WGS/PRJEB27928/metadata.txt -n 8 In this stage,"[WARNING] Indexing parameters (-k, -w or -H) overridden by parameters used in the prebuilt index."...

Can't open online URL

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Sorry, I couldn't open the online URL. http://smile.hku.hk/SARGs 

There are no pdf files in the output file directory.

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No pdf file is generated when I run with example 1. args_oap stage_one -i /home/bioinfo/sunyy/work/ARG/test/example/input -o /home/bioinfo/sunyy/work/ARG/test/example/1 -f fa -t 8 2. args_oap stage_two -i /home/bioinfo/sunyy/work/ARG/test/example/1 -t 8 and the...

”F:\CRC\GMMs-1.0.7\GMMs-1.0.7>java -jar gmms.jar JarClassLoader: Warning: Null manifest from input stream associated with: lib/jdmp-0.1.1.jar JarClassLoader: Warning: Null manifest from input stream associated with: lib/aspectjweaver-1.6.12.jar JarClassLoader: Warning: Null manifest from input stream...