DaRinker

Thanks for the reply. I compiled flye from source and it seems to run correctly at least for all of our "older" ONT fastq files (even just published a paper...

Ah! I might have (partially) identified the problem @mikolmogorov There's something about my working directory path that is contributing to the issue . If I take a "good" fastq, one...

Thanks. Agree that it could be system specific but cannot confirm. For now, not having the output directory be a subdirectory of the fastq file's location is working. Flye is...

And I see this: "Note: this only works with (prokaryotic) genomes without intron/exon structures or (2) FASTA (.faa or .faa.gz) files of protein sequences with header format from [Prodigal](https://github.com/hyattpd/Prodigal). So...

The plot.py script seems to be broken for me: > $ python $PLMBLAST_PATH/scripts/plot.py output.csv query.fasta plot.png -mode score -ecod > Traceback (most recent call last): > File "/home/bin/pLM-BLAST/scripts/plot.py", line 82,...