abcd-hcp-pipeline
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DCAN-Labs
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
### What happened? I added a step in the Dockerfile to copy over some matlab code that I edited. Just one m file. I built the Dockerfile. When I run...
Bumps [jinja2](https://github.com/pallets/jinja) from 3.1.3 to 3.1.4. Release notes Sourced from jinja2's releases. 3.1.4 This is the Jinja 3.1.4 security release, which fixes security issues and bugs but does not otherwise...
![dependabot[bot] avatar](https://avatars.githubusercontent.com/in/29110?v=4 "dependabot[bot] avatar"){kind=avatar}
### What happened? When using versions 1.4 and 1.3 of the abcd-hcp pipeline, we encounter a perplexing issue where certain datasets undergo preprocessing without generating the expected DCAN_BOLD_Proc_4.0.0 folder. This...
If you have data that contains some subjects with functional data and some without, you cannot submit one run command for the pipeline. You have submit one command for the...
### What happened? Dear abcd-hcp-pipeline Developers, I am currently working on processing Human Brain Network (HBN) subjects and have encountered an issue with the abcd-hcp-pipeline version 0.1.3, specifically, I am...
### A short summary of what you would like to see in the abcd-hcp pipeline. I see from the documentation and codebase that your bids-app supports T2w for use in...
### What happened? I ran into this error in the PostFreeSurfer stage that in searching looks like it may be related to an issue with ANTs known as the "bracket...
The indenting in the previous version was strange, and I think testing for success may have been wrong in some cases, in that warnings about failure could be issued before...
``` def get_readoutdir(metadata): """ get readout direction from bids metadata. !!Note that this method only applies where the nifti orientation is RAS!! :param metadata: grabbids metadata dict. :return: unwarp dir...