abcd-hcp-pipeline
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bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
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abcd-hcp-pipeline issues
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ImageOrientationPatientDICOM and InPlanePhaseEncodingDirectionDICOM are used in conjunction to get the readout direction of a subject. These are probably exclusively put in by dcm2bids, and we should allow for two cases:...
bids format physio data is very simple to read, we just need some logic for calculating proper bandstop parameters from a physio file.
currently the develop branch only supports a pair of magnitude images and a phasediff image. The only metadata it needs is the difference in Echo Times for the two images....