David Atkinson

as I mentioned above "If you want a dataset where the L and S pixel sizes are different, use the axial slices (OBJECT_phantom_T2W_TSE_Tra_17_1.nii)."

Order of dimensions: Should objects report the order of dimensions of their outputs? This might come as strings such as {'row', 'column', 'slab', 'echo', 'dynamic'}. This has the advantage of...

Position is an offset of the imaged region from the patient coordinate system origin. It’s similar to DICOM imageOrientationPatient, except I assume it refers to the location of the Fourier...

I am glad you managed to find where this reversal is taking place. Yes, do whatever to prevent people using them inadvertently.

In some of my other work, I use a structure to keep track of geometry. This has fields that parallel the DICOM geometry description (3D patient coordinate of centre of...

For many applications, you will probably want to update an existing Geometrical Info, rather than make a new copy. The names I used for the methods were: 'rot', 'flip', 'circshift',...

You need to change voxel size when comparing two reconstructions that used different underlying voxel sizes, e.g. in MR a high resolution T2 image and a diffusion image. For PET/MR,...

OK. So after this, would `resampled.get_geometrical_info()` correctly return the updated geometrical info?

The example below would be fairly intuitive, but it needs the `rotate` method to have an implicit understanding of how `NiftyResample` is going to interpret origins, rotation signs etc? ```...

`offset` is the location in LPS space of the voxel that has image coordinate (0,0,0). `offset` is in LPS space so the ordering should never change. The word 'zoom' implies...