Bart Cuypers

icon indicating a website link https://www.bartcuypers.com

icon location Antwerp, Belgium icon location Computational Biologist, Systems Biologist, #Leishmaniac

Results 3 comments of Bart Cuypers

Error in final step building database

Thank you for looking into this! This is the code I used on our cluster (with 700GB RAM and 36 cores): `ml BLAST+/2.12.0-gompi-2021b ml Perl/5.34.0-GCCcore-11.2.0 cd /scratch/xx/krakenuniq /scratch/xx/krakenuniq-0.7.3/krakenuniq/krakenuniq-download --rsync --db...

Error fetching genomes

I have the same issue. Does anyone know the cause and/or fix?

Error fetching genomes

Thank you. That would be great! I solved the problem for now by manually removing the genomes that throw an error, and using the --rsync flag on krakenuniq-download. After a...