Shikai Jin

Parsed hhr file has different name with a3m file

1

:exclamation: Make to check out our [User Guide](https://github.com/soedinglab/hh-suite/wiki). ## Expected Behavior hhr file should have same output to a3m file. ## Current Behavior When type this command, hhblits -i query.fasta...

To whom it may concern, I tried to use HHblits with the following command: /home/sj52/dependency/hh-suite/build/bin/hhblits -i query_1.fasta -o query.hhr -oa3m query.a3m -Z 50 -B 50 -d /home/sj52/dependency/database/pdb70 The input sequence...

github-pages 226 | Error: Liquid syntax error (line 5): Unknown tag 'twitter'

2

**Acknowledge the following** - [x] I carefully read and followed the [Getting Started](https://github.com/alshedivat/al-folio#getting-started) guide. - [x] I read through [FAQ](https://github.com/alshedivat/al-folio#faq) and searched through the [past issues](https://github.com/alshedivat/al-folio/issues), none of which addressed...

To whom it may concern, I want to reproduce the report of a paper https://www.biorxiv.org/content/10.1101/2020.03.22.002386v1. In this paper, the authors find 322 proteins that interact with SARS-CoV-2 and find the...

size mismatch for model.mapping

5

Hello again, I tried to run the protein function annotation task after downloaded pkl file. However, I got the following error: RuntimeError: Error(s) in loading state_dict for MultipleBinaryClassification: size mismatch...

How to run prediction of protein function

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Hello, Thank you again for your help in my previous issue. I can finally run the ProtST task on my cluster using one GPU. However, I need clarification about the...