Cristina de Andrés

High number of outliers in DMR analysis with `modkit dmr pair`

2

Hi everyone, I've been using `modkit dmr pair` to compare methylation between a **control** and a **mutant** sample for a specific motif. Here's the command I used: ```bash modkit dmr...

Filtering criteria used in Modkit extract calls output

1

Hello everyone, **code used: `./modkit extract calls calls.bam calls.tsv --reference ref.fasta`** I am analyzing modification calls with Modkit. When I view my aligned BAM file in IGV, I see good...