JustinYoung issues

Results 6 issues of


JustinYoung

a bug for the last step of merge

hi, Thanks for your useful software! When I performed the last step of the merging of two scaffolds with two different references, the "agp"files with the correspond between the pesudochromomes...

why so many homologous gene could not clustered into the same OG even they are almost same squences within different species?

Hi, i run so many times of orthofinder with different searching engines (diamond, blast_nucl, mmseqs, blast_gz) and the results about the OG families are not accurate at all. I think...

bcftools consensus genome, get not all chromosomes sequences!

Dear pd, Thank you for the software. When I use bcftools "consnensus genome" to get a pesudogenome with 20 chromosome numbers (genome size: about 2.5G), I only got three chromosomes...

needs-feedback

Question about the "-i INFO/DP", the different values get different results

Hello, Thanks for your convenient program to deduce introgression! Here is my issue. I used Dsuite to detect the introgression of my studied species, and the results are very diverse...

Question about Dquartets

HELLO, thanks for your convinient tool, i hava some questions when i perform the Dsuite. 1) i use the Dsuite Dquartets to get the all possible quaitets, but only with...

the significant results means tested species is a hybrid or just have gene flow?

Dear professor, Great software! I have an issue about the results about the hybrid. Here is the situation of my tests. I use there species of A, B, C and...