Cole Monnahan
Cole Monnahan
@zoyafuso-NOAA discovered some strange behavior when trying to do a simulation, he and @Lewis-Barnett-NOAA and I have been digging into it a bit. We're convinced there's a bug. Below is...
I'm using the development versions of VAST and FishStatsUtils, and recently updated to R and Rtools 4, and updated TMB to 1.7.19. When I do, I now get an error...
Recently @okenk and @jimianelli both mentioned they would like to have better options for a workflow. I'm open to that. Please use this issue to discuss what your preferred workflow...
It would be helpful to have an easy way to check a fitted object for any issues, like divergences, exceeding max_treedepth, BFMI, Rhat, ESS, etc. Basically to adapt this [code...
The function `.check_ADMB_version` crashes if the model is compiled with the fast flag `-f`. This needs to be robust to that flag, and probably also try to catch if the...
### Describe the solution you would like. I suggest that SS3 should modify all objective function components (i.e., data likelihoods, priors, and hierarchical penalties) to use the full log-densities statements....
### Describe the solution you would like. In many cases I believe it is more statistically justifiable to use a more flexible index likelihood than the lognormal. One appealing alternative...
Currently the advice for what to do when certain iterations of a scenario don't converge (defined by either big gradients or non-positive definite Hessian) is to simply drop them and...