Teaser

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On Ubuntu 20.04 The docker build fails with this message: ``` > docker build -t teaser_git . && docker run -v $(pwd):/teaser -it teaser_git "/usr/bin/teaser_shell.sh" Sending build context to Docker...

cmatKhan

other alignment tools?

7

Can Teaser be used to bench-marking RNA aligners?

Kapeel

Issue while running teaser.py

3

I am having issues like self.config["cache_directory"] = os.path.abspath(self.config["cache_directory"]) KeyError: 'cache_directory' and abs_test_dirs = [os.path.abspath(dir) for dir in self.config["test_directories"]] KeyError: 'test_directories' I looked at the code and I don't understand how...

gsonal802

[SEQPROV] RefBase file not found () when using NextGenMap with Teaser

1

It looks like the version of ngm packaged with Teaser suffers from this issue: Cibiv/NextGenMap#10 I was able to resolve the issue by configuring Teaser to use the ngm binary...

adamjorr