Li Chuin Chong

icon indicating a website link https://scholar.google.com/citations?hl=en&user=NSDlr5IAAAAJ icon indicating an email [email protected]

icon company TWINCORE (HZI) & MHH icon location Hannover, Germany icon location A biologist who exploring Bioinformatics #viral informatics #viral evolution #computational virology

Results 4 issues of Li Chuin Chong

Error while using hhalign

2 comment

Dear developer, I am trying to align a query MSA to a template hmm with this command: `hhalign -i alignedSeq_1.fasta -t seq.hmm -all -glob -v 0 -opsi hhalign_result_1.psi` Unfortunately, it...

AMOS installation error

Dear developer, I am planning to try minimus2 from circlator package. In order to run this, [AMOS](http://sourceforge.net/projects/amos/) must be installed. Hence, I tried installing AMOS using `conda install -c bioconda...

Suggestion: Download along with sequence metadata

6 comment

Dear developer, I just have a suggestion here. Sequence metadata usually is quite useful for data analysis for the downloaded sequence. Perhaps, you may consider adding that feature. Looking forward...

Can we download sequence from the clade level?

4 comment

Dear developer, I was trying to download protein sequences from the clade level (txid2559587). I was using this code. `python ../../NCBI_Mass_Downloader-5.2/NCBI_downloader.py -q "txid2559587[Organism:exp]" -d "protein" -nv -o C_Ribo21Jul21.fasta` Unfortunately, it...