Chi Liu

Hi Penna, Thank you for the suggestion! I will consider how to better add such method in this class. Best, Chi

Hi. Please first try to run the following codes and then perform lefse. I guess it is the reason of taxonomic information. ``` library(magrittr) data_micro$tax_table %% tidy_taxonomy data_micro$tidy_dataset() data_micro$cal_abund() ```...

Hi. Could you please attach your `me` object so that I can totally reproduce your issue? To save it, please follow the steps in the tutorial (https://chiliubio.github.io/microeco_tutorial/notes.html#save-function) and attach the...

Hi. The reason is that taxa_level "func" is not in the tax_table, while the methods like deseq, ALDEx2_t, edgeR and linda are designed for the sequencing abundance of units. The...

@hanareia I will add more checking and messages in the function for such usages in case of the data mismatch problem. Thanks.

Hi. Is it the example data inside the package? Though I am not sure how the warning message happened, there may be an available result. Please first check the result,...

Hi. Could you please attach your microtable object so that I can reproduce your issue? To save the data, please follow the steps in the tutorial (https://chiliubio.github.io/microeco_tutorial/notes.html#save-function) and attach the...

Hi. I cannot find the attached data. Please ckeck it. Thanks.

Hi @martina-nasuelli Please make sure the row names of otu_table and tax_table are ASV names. Then please ensure that the row names of otu_table are same with the tip labels...

Hi. One way is to create microtable object with minimum data file first and try to add another one. Then we can identify which one caused the error. ``` library(microeco)...