Chi Liu

Sorry. It is a bug. I have fixed it. Please reinstall the package from github and try again. Thanks.

Hi. You must use `cal_abund` function to regenerate the taxonomic abundance table list. Please add one step before you use `trans_abund` class. ``` dataset2$cal_abund() # then run t1

Hi. I take an example. This solution is to partly select the taxonomic lineages when generating the taxonomic abundance list。 ``` library(microeco) library(magrittr) data("dataset") dataset2

Hi. Could you attach your `meco_Physeq_PC_2019_ITS_September` so that I can reproduce your issue? To save your dataset, please follow the steps in the tutorial (https://chiliubio.github.io/microeco_tutorial/notes.html#save-function) and attach the compressed object.

Hi. I run the following steps sucessfully in a new created project with microeco v0.20.0 and ANCOMBC v2.2.0. The results show only "g__Mortierella" is remained in the test. ``` library(microeco)...

Hi. I have updated the microeco package in github. Please reinstall the new microeco version from github and try again. In the new testing, I reinstalled the ANCOMBC package v2.2.1...

Please first make sure the installed version is 1.0.0 from github as the following steps show. ``` install.packages("devtools") devtools::install_github("ChiLiubio/microeco") ``` In the new version, filter_thres is fine to do its...

Hi. I strongly recommend installing the microeco v1.0.0 in development from github and ANCOMBC package v2.2.1. I have tested them recently. The updated microeco version is robust in terms of...

Hi. Please find it in the release history (https://github.com/ChiLiubio/microeco/releases).

For such error, please try to add `filter_thres` parameter to filter the features with very low abundance. The reason is probably that low abundance/many zeors lead to low variances.