Chi Liu

Sure. Please first run the add_rownames2taxonomy function of your microtable object, which can add the ASV/OTU names as the taxa in the taxonomic table. Then run cal_abund function and the...

Hi Alberto, I have to say this is a good suggestion! It has been also mentioned in the github by others before. I am a little busy and only finish...

Hi. Please try to use `get_node_table` function in `trans_network` class.

Hi. Sorry. I forgot to add these two centrality indexes in the function yesterday. I have updated the package in the github. Please reinstall it from github and try again....

Hi @wangzhichao1990 This is a bug coming from the chaos of taxonomy lineage with "Incertae_Sedis". Such unclear taxonomy can cause the parent taxonomy disorder as many different taxa may has...

Hi. Please use `shape_values` parameter in `plot_ordination` function. It is easier to add `shape_values = c(16, 3)`.

In the axis, MDS has the same meaning with NMDS. If you want to use 'NMDS', please try to use `xlab` function of ggplot2 to change it.

Thanks. The anosim will be implemented in the trans_beta class. The manova here equals to perMANOVA. Please also see the document with `?trans_beta`

The warning message comes from the shape aesthetics. Both color and shape are used, the ggplot2 package can only use the groups of `plot_color`, so it drops the groups of...

Hi. In the updated github version, ANOSIM has been implemented in the new created `cal_anosim` function of `trans_beta` class. If you need it, please update your package from github and...