Chi Liu

Hi. I find nothing in the attachment. Please attach the compressed data in this github issue page. Thanks.

Hi. Please first update your microeco package to v0.20.0 and try again. I have tested your steps with my package v0.20.0. All the steps are ok. Please tell me if...

Hi. Please first try to run this shown in the tutorial (https://chiliubio.github.io/microeco_tutorial/other-examples-1.html#tidy_taxonomy-function). Remember to change the corresponding names. ``` meco_qiime2$tax_table %% tidy_taxonomy meco_qiime2$tidy_dataset() meco_qiime2$cal_abund() lefse_diff

The result of betadisper is a list. You can only save them by accessing each data like this. ``` # save overall significance write.csv(tmp_beta$res_betadisper$tab, "1.csv") # append observed paired write.table(as.data.frame(tmp_beta$res_betadisper$pairwise$observed),...

Hi. Could you please attach your dataset so that I can reproduce your error? To save your data, please follow the tutorial (https://chiliubio.github.io/microeco_tutorial/notes.html#save-function), which is the simplest way. Thanks.

Hi. I have run the steps successfully with your data in a new created project. Version: microeco v0.20.0; ANCOMBC v2.2.0. Could you please try again in a new project by...

Hi @jamorillo Thanks for your 'issue'. After checking this part again, I find that the y axis text can not be adjusted in the previous package version as both x...

Hi @jamorillo Sorry for that the code I paste was changed because of the escape character. I did not check the page yesterday because of the bad internet. I rewrite...

Now It is ok. The new_order is the names with new order we want to pass to the new plot. So we directly take and trim them from t2$res_rf$Taxa according...

Please feel free to tell me if you have other new ideas or issues. This can make the project better. Thanks in advance. Good luck! Chi