Chi Liu

This means there is actually no significantly differential taxa among the groups in "Origin".

Hi. The trans_diff class and lefse method in it is used to find the differential features by lefse across all the taxonomic lineages. Given that no significant feature is found,...

Hi. You can add a command of ggplot2. ``` g1

Could you please attach your data so that I can reproduce your issue? To save the `t1` and `dataset`, please follow the steps in the tutorial (https://chiliubio.github.io/microeco_tutorial/notes.html#save-function) and attach the...

Hi, I have introduced an additional parameter, NMDS_stress_pos, which allows for the adjustment of text positioning. When set to NULL, it means no anything to show. Please reinstall the package...

Hi. If you run `colnames(fun_16S$res_spe_func)` or `colnames(fun_16S$res_spe_func_perc)`, you can see there are three similar names: "aerobic_chemoheterotrophy", "chemoheterotrophy" and "anaerobic_chemoheterotrophy". Actually, the initial FAPROTAX database matching result has no "anaerobic_chemoheterotrophy", becase...

Hi. I think it is enough to get what you need by runing `1 - apply(fun_16S$res_spe_func, 2, sum)/nrow(fun_16S$res_spe_func)`.

Hi Jake, Good question! For the first one, I found there is a bug in the input_taxaname parameter, leading to the order not same with the input_taxaname. I will fix...

Hi Ilksen, Thanks. The easist way is to assign factors as the tutorial shows (https://chiliubio.github.io/microeco_tutorial/notes.html#group-order). I use the example data to show one here. ``` rm(list = ls()) library(microeco) library(magrittr)...

Hi. Could you please attach your `dataset` so that I can reproduce your result? Please save your dataset following the tutorial (https://chiliubio.github.io/microeco_tutorial/notes.html#save-function). Please also provide your microeco version. Thanks.