Chi Liu

The reason should be that there is no negative significant correlation after the filtering with your parameters. To test this, you can lower the correlation coefficient threshold and try again.

Hi. I used the example data to test the steps and found it is fine. So if an issue is still there, please make the plot using ggplot2 by extracting...

Hi @bfalco You are correct! Thank you very much for this finding. This is a bug in wilcox test when groups = 2. Sorry for that. The original version of...

Hi @bfalco Since I can not open the Galaxy Server now, I guess there have at least two points related with the difference after I look over your LEfSe.txt. First,...

Hi @bfalco I successfully run Galaxy server lefse with your data. I also updated github microeco with specified usage of parameter p_adjustment_method = NULL (without adjustment). I generate a new...

The v0.9.0 has been released on CRAN. The bug has been fixed. Thanks very much for your finding and suggestion!

Thanks. I will check how this difference is generated. This will be a tricky and slow work.

Excellent! This is a key point.

Hi. Could you please attach your data and steps so that I can reproduce your issue? To save your microtable object, please follow the steps in the tutorial (https://chiliubio.github.io/microeco_tutorial/notes.html#save-function) and...

Hi. Please also attach all the steps. I need to reproduce your issue. The dataset you attached cannot be found! Please send it to me via email ([email protected]).