Chi Liu

Hi. Interesting! This is an example to add these module assignments from test2 into test1. The way is to extract modules from test2 and assign back to test1. ``` #...

Hi. Yes. You have thought of it. It is feasible to add modules to NA. It is better to assign each unique module name to each NA. ``` # I...

Hi. The steps seem to be fine. So I may need your data to reproduce it. Could you please attach your data so that I can reproduce your issue? To...

Hi. I find that the reason is surprising NaN in sample 'S113' in each table of `taxa_abund`. It comes from all the 0 abundance of each feature for this sample....

Hi. I have fixed this bug in github. I plan to release the next version of microeco v1.2.1 in the coming several days.

Hi. The design of `tidy_dataset` does not change the features in `taxa_abund` list. It first manipulates otu_table, tax_table etc. Then select the samples in tables of `taxa_abund`, `alpha_diversity` table etc...

Hi. I found the reason is all the correlation coefficients larger than COR_cut parameter are not significant under current COR_p_thres parameter. When I try to run `MDVWLB$cal_network(COR_p_thres = 0.1, COR_cut...

Hi, @chikao0817 The issue comes from the wired taxonomy information-"c__c__" in the abund_table of lefse_diff: k__Bacteria|p__Candidatus_Melainabacteria|c__c__|o__Vampirovibrionales Actually, this part of code has the checking step and filtering for those taxonomy....

Thanks. It is interesting.

Hi, @amrvx4 Please first see the complete_na parameter in trans_env$new. If complete_na = TRUE, the function can run interpolation to fill the NA with the method in mice package. Sure...