ChenDepp

I use vg filter get read name from gam file,The number of reads obtained by vg stat should be calculated for both R1 and R2, not as a pair, so...

@adamnovak Sorry for the late reply. I found that there are only W lines in my GFA.  The reference pan-genome was built with minigraph-cactus. I want to use this...

@adamnovak I have determined that the pan-genome was constructed using minigraph-cactus, where ScTT is a pre-determined reference genome. However, there is no P line in my gfa  I used...

hi @glennhickey My pan-genome map was built using minigraph-cactus with ScTT as the pre-determined reference genome. However, there are no P lineages in my gfa. Is this normal? hi @adamnovak...