Peter Li

Results 12 comments of Peter Li

pip install does not work with python 12

Hi, I tried pip install this package with python 12 today and it seems successful. Here is my input and output in terminal: > (base) peterli@Peters-MacBook-Pro-2 ~ % pip install...

_split_train_data error

Hi, I am working on this issue.

kwarg management

I am now working on this issue.

Automated normalization

Hi, I am Peter Li, new member in Lengerich Lab and I am working on this issue.

Check colorbar labeling of plot_embeddings

This is Peter, member at Lengerich Lab. I am working on this issue.

Check colorbar labeling of plot_embeddings

String labels input and NaN handling is addressed in issue #260. Remaining issue: enable to plot original un-normalized data after being normalized for fitting and predicting.

Throw warnings for incorrect args and kwargs

This is Peter, working on this issue.

Enhance plot_lowdim_rep to support string labels and robust NaN handling

### Summary of changes - Moved `test_normalize.py` and `test_normalize_wrapper.py` into `contextualized/easy/wrappers/` as they test wrapper-level logic. - Clarified that `test_normalize_wrapper.py` was part of a failed attempt to support normalization in...

Enhance plot_lowdim_rep to support string labels and robust NaN handling

@cnellington I mean this PR to address issue #259. You may find some commit records about normalization under plot-embedding branch, as this branch is under fix-normalizaiton branch, not independent from...

Enhance plot_lowdim_rep to support string labels and robust NaN handling

Plot test: string label and NaN control ![discrete_labels_test_page-0001](https://github.com/user-attachments/assets/834c61d1-e5f6-49b1-9e9d-b4553d50832b) ![continuous_labels_test_with_nan_plot_nan_page-0001](https://github.com/user-attachments/assets/07f5f3ab-0468-4192-add0-26e34d1167b8) ![continuous_labels_test_with_nan_hide_nan_page-0001](https://github.com/user-attachments/assets/127f02c4-3819-4673-b238-98956f2e8b0c)