scTDA
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CamaraLab
An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
Hi @pcamara , I read your paper and you did an amazing tool, and now we want to use it in the lab. We tried to use our own data...
Some planned enhancements in scTDA (in random order): - Compatibility with Python 3 (through six) - Improve performance of connectivity_pvalue (through parallelization) - Implement gene ontologies - Implement relative subsampling...
PR for `draw` method for additional figure aesthetics: - Figure title and font properties - Figure frame removal flag Example code: ``` c.draw('Gran', ccmap='Reds', weight=2, dpi=200, figsize=(5,5), lw=1.0, title='Gran', font_props={'fontname':...
Hi, I receive the following error while trying to draw a list of genes, probably due to changes in the underlying matplotlib API: ``` c.draw(['GRIA1', 'SLC1A3']); --------------------------------------------------------------------------- AttributeError Traceback (most...
This is not an issue for the package per se. But I am wondering where can I access the mouse neocortex data used in your nice scTDA work? The link...
