CaitlinLloyd

Hi, I am also trying slice to volume correction, and it seems like my slspec.txt file is not being found for use in the s2v correction implementation. I am using...

Thank you so much for this. Unfortunately it is not working for me, even when I use the slice_order argument. The node input that is printed looks like this (which...

Great spot - thanks! I think part of the problem may have been running with the --dwi_only flag, but it is strange QSIprep is not picking up the path to...

Hi @mattcieslak, thanks again for this great pipeline! I am struggling a little bit to produce the eddy files, and wondered what I might be doing wrong? We have a...

Thank you for this! I am still not seeing anything other than these files in the eddy subfolder within qsiprep workingdir: _inputs.pklz _node.pklz _report command.txt eddy_corrected.eddy_command_txt eddy_corrected.eddy_post_eddy_shell_PE_translation_parameters eddy_corrected.eddy_values_of_all_input_parameters As far...

docker, here is command in case you see anything odd! nohup /usr/bin/docker service create --constraint 'node.hostname==gpu' --replicas 1 --reserve-cpu 8 --reserve-memory 16g --mode replicated --restart-condition none --name=qsi_`id -un`$qpath --mount type=bind,source=$indir,destination=/input,readonly=true...

Sadly that does not work either . We have tried a few different locations without too much luck, but not quite sure where to go next!