Cyril Pernet

get more informative error messages when data cannot be found (eg which subject) -- make loop to go other every subject and then report (saves time rather than re-run each...

Hello, I'm having trouble getting the kernel starting - has anyone encounter this before? _OS:_ Windows10 _Python:_ WinPython 3.8.1 (windows path setup, Matlab engine set up and running no problem...

std_limo between session contrast name

3

say we have sessions 1,2,3 - std_limo will automatically compute contrasts on betas for 1/2, 2/3, and 1/3 if one subject has sessions 1 and 3 only, it still works...

[MISC] Update guidelines on file formats and multidimensional arrays - for derivatives

24

- closes https://github.com/bids-standard/bids-specification/pull/1614 clarifies when to keep the same format and possibly to use h5 and zarr (although matlab format for zarr not clear) based on https://docs.google.com/document/d/1JtTu5u7XTkWxxnCIH6sxGajGn1qG_syJ-p14aejpk3E/edit?usp=sharing

version 1.9.9, fmri data issue for events.json for custom columns -- there is a warning saying a column is not described when the json is at the root folder --...

spm_BIDS.m DWI allows 'dir'

5

in the case of separate additional acquisitions AP/PA it currently fails, e.g. ``` f = {'/sub-048/dwi/sub-048_dir-AP_dwi.nii'} {'/sub-048/dwi/sub-048_dir-PA_dwi.nii'} {'/sub-048/dwi/sub-048_dwi.nii' } ``` simply adding 'dir' does the job

data viz

1

https://www.sciencedirect.com/science/article/pii/S1053811923002896?via%3Dihub

if task-rest runs and the smoothing kernel is empty is becomes = 3, the next run then become smoothed at 3 as well ; which if it is a task-*not...

new feature

2

See https://github.com/rordenlab/dcm2niix/issues/802, if adding some dcm2niix tag we can add metadata @MarDos1234 we would need to see with you how this would work

@CPernet @melanieganz let's finish that list -- we are ready https://github.com/openneuropet/PET2BIDS/wiki