RapClust
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COMBINE-lab
Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
Hello, I have created quant files, while executing the Rapclust --config config.yaml, I got the error mentioned below home/nucleome/.local/bin/RapClust:26: YAMLLoadWarning: calling yaml.load() without Loader=... is deprecated, as the default Loader...
The test currently used for identifying potential paralogs doesn't effectively use information beyond 2 conditions. We should generalize this code (and determine what is the right way to generalize the...
Hello Rob,. I have used Rapclust with the mapping results from sailfish. However, I want to use Salmon. I installed Salmon v0.9, and have the mapping results from Salmon Could...
Hi, I am comparing clustering results from CD-HIT and RapClust. One of the characteristics of CD-HIT is that it selects one representative transcript per cluster, while rapclust doesn't. Would it...
Use nearest neighbor approach to re-cluster contigs.
Add strand specific protocol to pipeline by editing sailfish code.
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Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes