Yiming

icon company The University of Hong Kong icon location PhD student in Stem cell biology and Bioinformatics

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No output and intermediate file

I double checked the reference genome i m using (cellranger: refdata-gex-GRCh38-2020-A) and the output bam file, both are chrM.

No output and intermediate file

I finally got this message: ``` Wed Oct 12 17:04:37 HKT 2022: maegatk v0.1.1 Wed Oct 12 17:04:37 HKT 2022: Found bam file: /usersdata/yiming/VIO/mito_cellranger/sc-D08/sc-D08/outs/possorted_genome_bam.bam for genotyping. Wed Oct 12 17:04:37...