CAVEclient

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Annotation uploading is not robust to some types

1

JSON encoding errors can occur with certain combinations of types. In particular, a list of numpy.int32s throws an error when used as a pt_position.

ceesem

https://github.com/bdpedigo/CAVEclient/blob/31099921a054bdea12727ec4cf001f711b8132b1/caveclient/materializationengine.py#L2136C3-L2136C3 parameter is never used in the method

bdpedigo

checks in get_latest_roots that all IDs are current

1

In some cases where a change has been made to a non-current version of the neuron, IDs that are not current IDs can be returned by get_latest_roots(). Example: ``` >>>...

ilexaquifolium

Querying synapses with bounding box fails

6

Hello! I tried to run > # Load synapse table > datastack_name = 'minnie65_public' > client = CAVEclient(datastack_name) > synapse_table = client.info.get_datastack_info()['synapse_table'] > df=client.materialize.query_table(synapse_table, > bounding_box = [[0,0,0], [10, 10,...

javierhow

https://github.com/seung-lab/CAVEclient/blob/1e4fbbcfa357ea0719c186666a5a39393a949733/caveclient/chunkedgraph.py#L1012 https://github.com/seung-lab/CAVEclient/blob/1e4fbbcfa357ea0719c186666a5a39393a949733/caveclient/chunkedgraph.py#L1024 In some cases where a change has been made to a non-current version of the neuron, IDs that are not current IDs can be returned by get_latest_roots(). Example:...

ilexaquifolium

Hey all! I've got a query that looks like: `input_neuropils {equal} PVLP_R {or} input_neuropils {equal} SAD` and I'd like to download all the resulting data. In the past my lab...

IanQS

Hi! I ran into this error when trying to get the annotation count for a reference table: ```Python >>> client = CAVEclient('flywire_fafb_production') >>> client.annotation.get_annotation_count('fly_synapses_neuropil_v5') --------------------------------------------------------------------------- HTTPError Traceback (most recent call...

schlegelp

fixing timestamp parsing

1

changes the way timestamp parsing works on user_operations

fcollman

relax pyarrow version requirements?

2

can we allow pyarrow>=12 now? https://github.com/seung-lab/CAVEclient/blob/7fbc0e20c3b42236989e4f103411454b92111b81/requirements.txt#L2 It would require additional logic for the deserialize step here (to check the version of pyarrow / if `pa.deserialize` is available) : https://github.com/seung-lab/CAVEclient/blob/7fbc0e20c3b42236989e4f103411454b92111b81/caveclient/materializationengine.py#L41 so...

jefferis

The current implementation of data frame metadata using the `df.attrs` semi-functionality in pandas is useful, but it has a bug/decision that produces an exception when doing dataframe concatenations because some...

ceesem