BrendaLee1
BrendaLee1
Hi! I tried the following commands： singularity exec --bind /usr/lib/locale/ \ pepper_deepvariant_r0.8.sif \ run_pepper_margin_deepvariant call_variant \ -b "${INPUT_DIR}/${BAM}" \ -f "${INPUT_DIR}/${REF}" \ -o "${OUTPUT_DIR}" \ -p "${OUTPUT_PREFIX}" \ -t "${THREADS}"...
Hi, I tried to build database for my VNTRs, the following error occurred: Traceback (most recent call last): File "/rd1/laixh/soft/anaconda2/envs/snakemake/bin/advntr", line 33, in sys.exit(load_entry_point('advntr==1.5.0', 'console_scripts', 'advntr')()) File "/rd1/laixh/soft/anaconda2/envs/snakemake/lib/python3.10/site-packages/advntr-1.5.0-py3.10-linux-x86_64.egg/advntr/__main__.py", line 149,...
Hi! The following error always occur when I run genotype command on pacbio bam file: Traceback (most recent call last): File "/soft/Anaconda/anaconda3/bin/advntr", line 11, in sys.exit(main()) File "/soft/Anaconda/anaconda3/lib/python3.6/site-packages/advntr/__main__.py", line 134,...
Hi, I use 35 hyplotypes to build RPGG for my VNTR sets, I find that the program always reports the following error when I run /soft/danbing-tk-1.1//script/preMBE.py /35Hyplto/genome.bam.tsv pan.tr.mbe.v0.bed: beds[hi,m] =...