Brady Johnston

The new surface style in MolecularNodes v2 now makes this a lot more similar to PyMol. Seems to work on your example PDB! It's still not quite the _same_ algorithm...

I've had a go at implementing this, and now that MN has been refactored, it's actually quite easy to add a new set of attributes / data to be added...

implemented in #131

All of the supplied files (except the one generated by `gemmi` can now be parsed with MolecularNodes 2.0. It is also structured now in a way to enabled debugging and...

If somebody can come up with a parser (one probably exists in a function in MDAnalysis or similar somewhere) that can parse the `.ndx` files which provide the atom groups...

oooh thanks for pointing this out! I hadn't looked into it deeply yet, but it seems like this should be straightforward to implement. Happy to support a PR, if you'd...

In terms of contributing, I've got some minor details in the README about how to do it in terms of building your own Molecular Nodes. You'll want VSCode and a...

If you have questions about approach to take, please let me know! As a brief outline, you'll want to: 1. Fork the repo into your github account. 2. Download your...

Closing this as the sugar and ligands are discussed in #79 and water is now able to be ignored on import.

After the MolecularNodes re-write I thought this would be fixed, but it turns out this is still an issue with Biotite as well: https://github.com/biotite-dev/biotite/issues/449 This is unfortunately still an issue,...