histoCAT Error during PhenoGraph calculation

Error during PhenoGraph calculation

Open maxgrigori opened this issue 3 years ago • 6 comments

Hello,

I have run into a repeating problem when trying to analyze my IMC data via PhenoGraph, as the necessary step prior to neighbourhood analysis. When running PhenoGraph with e.g. k=30 I get ~30 clusters, of which the first 5-7 clusters show a "cross-shape" with incredibly high values when overlaid with a tSNE (Screenshot attached below). When exporting the .csv-files of these clusters, it shows that incredibly high marker intensities have been calculated (2nd screenshot attached). The rest of the resulting clusters appear to be calculated normally and are also projected normally.
Unfortunately, the subsequent neighbourhood analysis fails - citing "Error while evaluating Menu Callback" later.

During the calculation of the PhenoGraph itself no error is given. (I'll cite the cmd-progress report below anyways, maybe there is something suspicious?) Otherwise I am using histoCAT 1.76 on a Windows10 system.

What may cause the issue and how could it be solved?

I'd be very grateful for your help! Thank You and have a nice day! Best, Max

PS: Finding 30 nearest neighbors... Building Jaccard Graph... 10 percent complete: 3.89 s 20 percent complete: 7.65 s 30 percent complete: 11.41 s 40 percent complete: 15.14 s 50 percent complete: 18.86 s 60 percent complete: 23.06 s 70 percent complete: 26.77 s 80 percent complete: 30.59 s 90 percent complete: 34.49 s 100 percent complete: 38.29 s Finished Jaccard graph in 38.29 s Edge number pruned from 1.26296e+07 to 1.06504e+07 Sparsity: 5.38549e-05 Writing graph to .bin file Percent done: 10 20 30 40 50 60 70 80 90 100 Finished writing .bin file in 192.18 s In windows.. MATLAB: calling convert: C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\convert.exe -i C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.bin -o C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights MATLAB: running community detection, ITERATION 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: modularity scores: C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: max level is 4 MATLAB: importing level 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 1 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 2 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 3 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 4 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 4 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: running community detection, ITERATION 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: max level is 4 MATLAB: importing level 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 1 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 2 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 3 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 4 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 4 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: running community detection, ITERATION 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: max level is 4 MATLAB: importing level 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 1 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 2 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 3 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 4 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 4 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: running community detection, ITERATION 4 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: max level is 3 MATLAB: importing level 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 1 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 2 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 3 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: running community detection, ITERATION 5 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: max level is 4 MATLAB: importing level 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 1 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 2 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 3 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 4 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 4 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: running community detection, ITERATION 6 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: max level is 4 MATLAB: importing level 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 1 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 2 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 3 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 4 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 4 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: running community detection, ITERATION 7 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: max level is 4 MATLAB: importing level 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 1 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 2 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 3 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 4 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 4 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: running community detection, ITERATION 8 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: max level is 4 MATLAB: importing level 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 1 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 2 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 3 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 4 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 4 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: running community detection, ITERATION 9 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: max level is 3 MATLAB: importing level 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 1 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 2 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 3 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: running community detection, ITERATION 10 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: max level is 4 MATLAB: importing level 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 1 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 2 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 3 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 4 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 4 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: running community detection, ITERATION 11 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: max level is 4 MATLAB: importing level 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 1 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 2 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 3 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 4 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 4 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: running community detection, ITERATION 12 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: max level is 3 MATLAB: importing level 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 1 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 2 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 3 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: running community detection, ITERATION 13 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: max level is 4 MATLAB: importing level 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 1 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 2 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 3 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 4 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 4 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: running community detection, ITERATION 14 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: max level is 4 MATLAB: importing level 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 1 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 2 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 3 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 4 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 4 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: running community detection, ITERATION 15 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: max level is 4 MATLAB: importing level 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 1 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 2 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 3 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 4 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 4 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: running community detection, ITERATION 16 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: max level is 3 MATLAB: importing level 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 1 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 2 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 3 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: running community detection, ITERATION 17 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: max level is 4 MATLAB: importing level 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 1 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 2 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 3 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 4 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 4 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: running community detection, ITERATION 18 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: max level is 4 MATLAB: importing level 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 1 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 2 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 3 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 4 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 4 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: running community detection, ITERATION 19 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

MATLAB: max level is 4 MATLAB: importing level 1 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 1 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 2 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 2 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 3 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 3 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: importing level 4 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\hierarchy.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree -l 4 > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tmp MATLAB: running community detection, ITERATION 20 C:\Users\Maxim\AppData\Local\Temp\Maxim\mcrCache8.4\histoC0\histoCAT\3rdParty\PhenoGraph\Louvain_d\community.exe C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.bin -l -1 -v -w C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G_graph.weights > C:\Users\Maxim\Documents\IMCAnalysis\20201117_Analysis_allBiopsies\custom_gates_0\G.tree

In LouvainfromBin_Windows>cleanup at 109 In LouvainfromBin_Windows at 82 In phenograph at 73 In Run_Phenograph_Callback at 37 In analyze_button_Callback at 80 In gui_mainfcn at 95 In histoCAT at 42 In @(hObject,eventdata)histoCAT('analyze_button_Callback',hObject,eventdata,guidata(hObject)) Warning: File 'G.tree' not found. In LouvainfromBin_Windows>cleanup at 109 In LouvainfromBin_Windows at 82 In phenograph at 73 In Run_Phenograph_Callback at 37 In analyze_button_Callback at 80 In gui_mainfcn at 95 In histoCAT at 42 In @(hObject,eventdata)histoCAT('analyze_button_Callback',hObject,eventdata,guidata(hObject)) Warning: File 'G_graph.weights' not found. In LouvainfromBin_Windows>cleanup at 109 In LouvainfromBin_Windows at 82 In phenograph at 73 In Run_Phenograph_Callback at 37 In analyze_button_Callback at 80 In gui_mainfcn at 95 In histoCAT at 42 In @(hObject,eventdata)histoCAT('analyze_button_Callback',hObject,eventdata,guidata(hObject)) Warning: File 'G.bin' not found. In LouvainfromBin_Windows>cleanup at 109 In LouvainfromBin_Windows at 82 In phenograph at 73 In Run_Phenograph_Callback at 37 In analyze_button_Callback at 80 In gui_mainfcn at 95 In histoCAT at 42 In @(hObject,eventdata)histoCAT('analyze_button_Callback',hObject,eventdata,guidata(hObject)) Warning: File 'G_graph.bin' not found. In LouvainfromBin_Windows>cleanup at 109 In LouvainfromBin_Windows at 82 In phenograph at 73 In Run_Phenograph_Callback at 37 In analyze_button_Callback at 80 In gui_mainfcn at 95 In histoCAT at 42 In @(hObject,eventdata)histoCAT('analyze_button_Callback',hObject,eventdata,guidata(hObject)) assigning random number for current Phenograph File loaded: 0.244004s Allocated space for data: 0.41388s Read data into session: 0.583132s File loaded: 0.153685s Allocated space for data: 0.111081s Read data into session: 0.446758s [...] File loaded: 0.0928287s Allocated space for data: 0.0894717s Read data into session: 0.552152s Phenograph clusters are stored as fcs files in custom_gates_0...

Screenshot 2021-05-20 195334 Screenshot 2021-05-20 195443

May 20 '21 18:05 maxgrigori

histoCAT histoCAT copied to clipboard

Error during PhenoGraph calculation

histoCAT
histoCAT copied to clipboard