Bodako

Dear @s-aibar, Hello, I have the similar problem with the hg38 database. When I checked the sha256dsum with our database files, they were correct : fea7f9159645392970ecb2c902fb0622681dd63b9a47b36363f50569c5989f62 hg38__refseq-r80__10kb_up_and_down_tss.mc9nr.feather e7f980ec2f9ddedcfc563d9ab045ea6b769eba654d3348a1fc6140b1575f9428 hg38__refseq-r80__500bp_up_and_100bp_down_tss.mc9nr.feather I...

Dear @rvolden, Thank you for your kind answer! I meant I did three separate runs. Sorry for confusing you. I tried to rerun the following codes after removing the `rm...

Dear @rvolden, Thank you for your kind support! I followed your advice. ``` /appl/blat/blatSrc/bin/blat -noHead -stepSize=1 -t=DNA -q=DNA -minScore=15 -minIdentity=10 data/10x_UMI_splint.fasta data/R2C2_q7_pass_merged.fastq data/output/PM-PS-0001-T_R2C2/c3poa/tmp/splint_to_read_alignments.psl ``` And I obtained followed comment. ```...

Dear @rvolden, Hello, Thank you for your kind support!! I updated new C3POa.py and did run with the test fastq (includes 100 reads) and reduced thread `-n 2`. It passed...

Dear @rvolden, Thank you for your continuous feedback. I removed the output and ran again with `-n 10`. It is progressing than before, but still not. In the real dataset,...