Bo
Running a large number of external tasks executed on a cluster system could be frustrating with cluster-related failures. It is appealing to stop using external tasks and execute the workflow...
Right now we allow for ``` dynamic('a.txt') dynamic(['a.txt', 'b.txt']) dynamic('*.txt') ``` and we resolve them to ``` 'a.txt' 'a.txt', 'b.txt' pattern matching.... '*.txt' ``` and the returned target might not...
``` $ sos remote setup 172.16.209.130 WARNING: Treating undefined host 172.16.209.130 as address of a remote host. INFO: Using existing public key .ssh/id_rsa.pub ERROR: 'Namespace' object has no attribute 'test_connection'...
#1378 Similar to the implementation of `SOS_DEBUG`, we can define `SOS_WARNING` and disable some or all warnings. The implementation is almost identical to `SOS_DEBUG` and should be straightforward. The selection...
Workflow ``` input: for_each=dict(i=range(5)), concurrent=True python: expand='${ }' import time import os for rep in range(100): print(f'I am {rep} of task ${i} from {os.getpid()}') time.sleep(1) ``` Submit `Ctrl-C` after the...
Right not tasks status remains at `pending` if it is failed to submit.
As far as I remember, one of the advantages of using `mpiexec` to start commands on nodes is that the cluster system would be able to know the resources used...
When a job is killed, the `sos execute` command will be killed, but the command to start remote worker somehow is not killed: ``` $ ssh q1prphtcb01 'bash -c "ps...
Currently we use compressed `pickle` for the serialization and deserialization of signatures, which are saved to sqlite databases. We should evaluate the possibility of using msgpack because it is said...
Basically, `sos remote run host --cmd command` translates to ``` ssh -q host "bash --login -c 'command'" ``` so the command will fail if it contains `'` or `"`, or...