NeuroM

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Feature cache

10

# Issue Sometimes we want to compute features on different sets of neurites or morphologies. While it is possible to compute all the features we need, store them and then...

adrien-berchet

Explicitly populate feature dictionaries with all available features.

6

This is a PoC of registering all features that will be available by `features.get` beforehand, instead of implicitly delegating a neurite, morphology or population or collections thereof, to the respective...

eleftherioszisis

Make fork iterators homogeneous

2

eleftherioszisis

New Feature: Topological Asymmetry

3

Reviewing again validations in the literature I came across to "topological asymmetry". It is not the same as the "partition" feature in NeuroM. @lidakanari could you help with a precise...

chalimou

Axon metrics at zero for some files

30

Hello, I am using NeuroM to compute some morph metrics on the soma, axon, basal dendrites and apical dendrite. In some cases, the axon metrics are all zeros even though...

jonathanlurie

allow for neurites to be attached to neurites

28

Proposal for https://github.com/BlueBrain/NeuroM/issues/975

arnaudon

fix plot limits

3

Automatic limit for matplotlib were done with soma size only, and do not work with cli.

arnaudon

Option to plot nrn_secid labels

1

This adds NEURON section id labels to each section corresponding to the NEURON id of the given section list. It can be used as follow: neurom view --plane xy --nrn-secid...

arnaudon

To my knowledge, there is no way to have the list of all available checks. It would be cool if we had the equivalent of `morph_stats -l` for `morph_check`.

wizmer

**Issue:** When subtrees are considered, the neurites are broken into their homogeneous subtrees, increasing the tree cardinality. This can be problematic if this data is used for synthesis for instance...

eleftherioszisis