BluePyOpt

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distinguishing areal from point locations in hoc

2

This is the reproducing example: ```python BluePyOpt$ ipython Python 3.8.10 (default, Jun 22 2022, 20:18:18) Type 'copyright', 'credits' or 'license' for more information IPython 8.5.0 -- An enhanced Interactive Python....

anilbey

Non-existing myelin section has len(icell.myelin) > 0 causing error on access

2

That works on myelin and the `len(self.icell.myelin) == 1` looks like a bug given that NEURON crashes, complaining that the section was deleted upon accessing e.g. `self.icell.myelin[0]`. I've added safe...

lukasgd

When NEURON simulation runs are not isolated, the results can get corrupted and memory not freed - leading to a larger memory usage. This happened in https://github.com/BlueBrain/BluePyEModel/pull/111 when BPO processes...

anilbey

Arbor internal syntax parser is coded in bluepyopt

13

This module for parsing Arbor syntax is part of BluePyOpt. Changes in newer versions of Arbor cannot be reflected in this module because it is integrated within BluePyOpt. To ensure...

anilbey

The replacement axon initial segment is hard coded to 60 micrometers, and two sections. Here is a pull request with a minimal fix for it: https://github.com/BlueBrain/BluePyOpt/pull/496

Hjorthmedh

parent population

4

I am using BluePyOpt to optimize a model implemented in NEURON. In the optimization, I choose a parent population generated a-priori.   The average fitness of the individuals worsens...

FrancescoCavarretta

Something critical changed from 1.14.14 to 1.14.15

1

Hi. I have just installed Ubuntu on a new single blade and I was not able to run my optimization scripts with 1.14.16. I downgraded to 1.14.14 and everything is...

SteMasoli

use pyproject.toml and remove versioneer

1

AurelienJaquier