Atlas-Download-Tools
Atlas-Download-Tools copied to clipboard
BlueBrain
Search, download, and prepare brain atlas data.
https://github.com/BlueBrain/Atlas-Download-Tools/blob/b08093f5bebf53c7491ce1b314382eeb0e78d656/src/atldld/utils.py#L205 The motivation behind making the search case insensitive is that the web interface is also case insensitive. http://mouse.brain-map.org/ However, it is not a must
The following code snippet sends a particular RMA query, for which the number of results returned by the server is always consistently smaller than the total number of results reported...
Fixes #98 See the linked issue for the description of the problem. New behaviour: don't error out if not all RMA results are sent by the server, just print an...
Here's the output I once got: ```shell $ atldld dataset download 75492803 out Dataset ID : 75492803 Downsample reference : 25 Downsample image : 0 Include expression : False Output...
- [ ] Support RGB images - [ ] Check if works for coronal slices - [ ] Map other volumes and compare - [ ] Think about applications
Closes #95 Download a dataset and map the section images exactly as suggested by sync, e.g.:  At the moment this is a dirty draft,...
See screenshot. It would be better to show the text "coronal/sagittal/..." etc. as in the `atldld dataset info` command.  o
Since the CLI is probably the most straightforward way of using `atldld` I think we should have a dedicated section in the docs for it.
Currently, we only support downloading of ISH data, however, it might be useful to provide support for downloading of the standardized annotated atlases + reference (Nissl) volumes More context: https://help.brain-map.org/display/api/Atlas+Drawings+and+Ontologies