Atlas-Download-Tools
Atlas-Download-Tools copied to clipboard
BlueBrain
Search, download, and prepare brain atlas data.
In #40 a very simple logic of determining the refspace coordinate was implemented (inside of `download_dataset_parallel`). Namely: 1. Let the user choose `detection_xy=(x, y)` which is a fixed point in...
This is a follow up to https://github.com/BlueBrain/Atlas-Download-Tools/pull/42#discussion_r689450383 There are nearly infinite possibilities for abstractions of the AIBS RMA grammar. It might be beneficial to include some of them as part...
I suggest writing a step-by-step documentation on what is going on behind `download_dataset`. The source code is very hard to follow (I am blaming myself). We had multiple discussions about...
Mainly the functionality allowing to retrieve image ids of a given a dataset-id/gene-id.
Currently, the code coverage is equal to - 76% when `internet` and `slow` tests are enabled, - 60 % when they are disabled. ## What to do ? - Create...
A new "Volume" class could wrap the brain volume data and hold additional metadata like - metadata from the download - path on disk - the non-zero slices - etc....
Some dependencies are not necessary for this package. - OpenCV ? - Matplotlib? - Pandas ? We should try to get rid of them.