Björn Johansson
Björn Johansson
Hi and thanks for your interest in pydna. I have been busy with this years round of grant proposals, nomrally I try to respond quicker. The crispr module right now...
Not sure yet, This is what happens in the old version. This is not good as it actually hides the problem. ``` (n39) bjorn@bjorn-ThinkPad-T450s:~$ python Python 3.9.19 | packaged by...
Hi, Ill have a look and get back to you asap.
OK, lots to digest. In principle I don't mind putting this alongside and eventually replace the existing code. Ill read it carefully and get back to you.
I would expect this to return the sequence or going around as much as needed. Perhaps the former as I cant think of a reason for the latter right now....
There is a new ligation module coming up! Ill push it and let you know.
check out the "ligate" branch. It has a new "ligate" module.
Maybe I misunderstood. Is it ligation or homologous recombination? A custom algorithm would certainly be possible, but I am not sure how to model the assembly with imperfect ssDNA domains.
@kcorreia and thanks for taking your time to report this. The default interpolator goes down to 75 bp. It is based on the data from the GeneRuler_1kb_plus list in the...
OK, I suppose a filter could be added to avoid the somewhat mysterious error message. Ill get around to fix this in the next release.