Björn Johansson

I would like to keep parse for now, I have lots of old code depending on it. It could be something that calls `parse_from_string` and then `parse_from_path`.

Thanks for your interest in pydna. I have thought about approaching the biopython team about this but I have not got around to do that yet. It would certainly facilitate...

growth rate modelling https://en.wikipedia.org/wiki/Logistic_function#In_ecology:_modeling_population_growth http://stackoverflow.com/questions/4308168/sigmoidal-regression-with-scipy-numpy-python-etc http://digitalcommons.usu.edu/cgi/viewcontent.cgi?article=1330&context=gradreports http://www.math.usu.edu/~powell/ysa-html/ysa-html.html http://aem.asm.org/content/77/8/2772.full http://mattoc.com/read-xlsx-with-xlrd.html http://nbviewer.jupyter.org/gist/rossant/9463955 qgrid

Visualization of DNA molecules: https://pypi.python.org/pypi/giraffe/2.0 https://github.com/ikravchuk/json2angularplasmid https://github.com/mengqvist/DNApy https://www.biostars.org/p/94400/ http://biopython.org/DIST/docs/tutorial/Tutorial.html#htoc252

Gel analysis [google](https://www.google.com/search?q=python+opencv+agarose+gel+image&oq=python+opencv+agarose+gel+image&aqs=chrome..69i57.8974j0j7&sourceid=chrome&ie=UTF-8) PyElph https://pypi.python.org/pypi/gelutils

Annotation of DNA sequences: http://www.vicbioinformatics.com/software.prokka.shtml http://wishart.biology.ualberta.ca/PlasMapper/ https://www.biostars.org/p/188955/ https://biosustain.github.io/goodbye-genbank/

simplify download from more sources: https://pypi.python.org/pypi/simplegist/1.0.1 possibly add a download function from addgene? ``` import requests from lxml import html r = requests.get('https://www.addgene.org/13744/sequences/') tree = html.fromstring(r.text) rawdata_addgene_full_sequence = tree.xpath(".//*[@id='depositor-full']") pGL_MLKif3B...

# Notes before new release 1.2.0 - add docstrings to design module - add warnings for old functions in design.py - add a find method to Dseqrecords that can find...

Hi Tim, Great suggestions! Your web form looks like a good way of checking final results. However, I tried the examples and they didn't come back with a result yet,...

https://academic.oup.com/nar/article/43/10/4823/2409072/GenoLIB-a-database-of-biological-parts-derived email conversation: ---- Dear Dr. Peccoud, I was not able to download the supplementary data from your recent NAR paper on GenoLIB. I probably should have contacted the journal...