Bjoernsen

Possible IO performance issue

21

Maybe there is an IO bottleneck. When I have let’s say 1000 `Hits` the command `lib.runMultiProgress(runExonerate, Hits, args.cpus, progress=args.progress)` (https://github.com/nextgenusfs/funannotate/blob/master/funannotate/aux_scripts/funannotate-p2g.py#L318) runs the method `runExonerate` 1000 times in parallel. Let’s say...

Rescan databases dir

7

I have a central resource managing e.g. fasta files and building the corresponding blast+ indices automatically. I have a fully automated deployment pipeline of blast+ indices to the sequenceserver database...

7.1 update: strange serialize behavior

4

Currently, I try to update my app from rails 7.0 to 7.1. One thing that I recognized it the behavior of searching for DB entries where `serialize` is used for...

Hi, I just ran into an issue with picard (3.4.0) . I have a CRAM file for a large genome. This is why it does not have a CRAI index,...

Add possibility to rename downloaded file #495

5

Hi, I tried to enable the possibility to rename a file to a user specific name (but keep the extension) #495. I used `customNamePrefix` as a template and added the...