Bitao Qiu

icon location Freiburg icon location Alexander von Humboldt Postdoc fellow at the University of Freiburg; Student of social insects and major evolutionary transitions in individuality.

Results 3 issues of Bitao Qiu

High BUSCO duplication rate for low coverage HiFi data

5 comment

Dear authors, I am applying Hifiasm to assembly our Hifi read data (DNA from a single individual for each species). However, we notice that the duplication rate (based on BUSCO)...

Using miniprot to identify homologous transposable elements?

It just comes to me that miniprot might be used to identify homologous TEs (based on evolutionary distant TE protein sequence) because many TEs have conserved domains (and structures) although...

LTR retriever is not compatible with RepeatModeler2 since v2.9.8?

5 comment

Dear LTR retriever developers, I was using RepeatModeler and found that there is no output from LTR retriever (v2.9.8 and v.2.9.9, either from GitHub or Conda). This seems to have...