Biomicrogen

How to remove ambiguities?

4

I know you can do this with seqtk, but I cannot find the command in the readme file? I want to change all the ambiguious codes to "N" in my...

exit on classify

2

Heya guys, I'm getting an error on classify? Run command: sudo ./runPipeline -d /media/biomicrogen/UBDISK/biomicrogen/runs/MiSEQ -p 8 -f Scaffold -n FindORFS,Abundance -a SOAPdenovo2,MaSuRCA,ABySS,SPAdes -X reapr,lap,quast [***************************************************************** ************************_ERROR**_******************************** During classify, the following...

Error during validation

1

Greetings All, I have been using imetamos to optimize an assembly of two librarys obtained from the same culture. The culture contains 2 or 3 organisms (basically a contaminated culture)....