BioinformaNicks

So I think I got it working with a workaround: ``` m_t2g % dplyr::select(gs_name, entrez_gene) %>% dplyr::distinct(gs_name, entrez_gene) go_m_t2g % filter(., gs_subcat != 'HPO') %>% dplyr::select(gs_name, entrez_gene) %>% dplyr::distinct(gs_name, entrez_gene)...

Nevermind, I found a workaround. For future reference for others: specificy node_label = 'gene' (or category, depends on what you want) and then add a geom_node_text using plot$data[1:n,3] as label...

I tried length(composition_arranged$patches$layout$design) and it gave me the correct length. Had the same issue: I did a seq_along(p3$patches$plots) only to discover that it did not count the last plot.

> Just banged my head against this as well, but @BioinformaNicks solutions doesn't seem to work for me, any other suggestions?: > > ```r > library(ggplot2) > library(patchwork) > p...

@kokyriakidis Just a small question: how did you get xHLA to work on Nanopore fastq's? We're having some trouble currently. Did you use minimap2? Which reference did you use, Hg38...

@kokyriakidis Firstly, thanks a lot! Second, we're using that, but still having some issues on public data. Any particular processing you used? Running their Docker image without any modifications?