BioinfoMonzino

sequencing batch effect

1

Hi, I would like to know if there is a way with Immunarch to analyse the TCRbeta repertoire data taking sequencing batch effects into account. Thnaks in advance!

Hello, I would like to know if there is a way to analyse TCRbeta repertoire data with VDJtools taking into account the effects of batch sequencing, considering that my experimental...

FilterByFrequency function issue

2

Dear mikessh, I'm using VDJtools to analyze TCRbeta sequencing data and I find it worth for my purposes. I started applying pre-processing steps but when I try to use the...

workflow 16s error

1

Dear mantainers, I'd like to use the biobakery workflow to perform my analysis on 16s data. I'm currently using the Docker container ([https://hub.docker.com/r/biobakery/workflows](https://hub.docker.com/r/biobakery/workflows)). However, after (1) downloading the gg references,...

PIUMA

36

Update the following URL to point to the GitHub repository of the package you wish to submit to _Bioconductor_ - Repository: https://github.com/BioinfoMonzino/PIUMA Confirm the following by editing each check box...

2.0.3 vs 4.0+ stacking results differ

22

Probably a general and naive question, but I recently used caretEnsemble (both caretList and caretStack functions) for a classification analysis with the new version 4.0.1, but when comparing the results...