basilisk

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Hi, i have installed basilisk in R (for ubuntu 22). when i run "BasiliskEnvironment", i found that the download speed for Python packages from conda's official mirror is too slow....

chenxing-zhang

This improves the consistency of the environments across different users and systems that might specify more channels in their .condarc. Maybe should wait for the next release before merging, this...

LTLA

LTLA

vjcitn

centralize external package references and block an apparent error in son.of.basilisk

2

This version passes check on a linux machine with BASILISK_MINICONDA_VERSION=py311_23.11.0-2

vjcitn

Warning message: In install.packages(...) : installation of package ‘basilisk’ had non-zero exit status

1

Hi I am trying to install basilisk to Windows with R 4.3.2, while I get error: Warning message: In install.packages(...) : installation of package ‘basilisk’ had non-zero exit status I...

AlbertSL98

using basilisk on GitHub Actions

9

Hello, I was really excited to come across `basilisk` recently, as it addresses many of the things I've been trying to find hacks around for the last several years. In...

bschilder

Error in installConda() : conda installation failed with status code '2'

16

Hello, thank you very much for developing this software. I encountered the following error while running writeH5AD locally. How can I correct it? > writeH5AD(sce, file = 'D:/filtered_featured_bc_matrix.h5ad') Error in...

maqingyue

Timeout in tests

1

Hi @LTLA , Basilik is currently timing out in both release and devel on the BioC build system (http://bioconductor.org/checkResults/release/bioc-LATEST/basilisk/). This is preventing the propagation of the Mac binaries for all...

grimbough

Error on basilisk env for spatialDE wrapper

15

Hi @LTLA , I'm not sure if this is an error of basilisk, but it happened when the basilisk environment is created to run functions. Specifically, recently the Linux build...

davidecrs