Reed Woyda

icon indicating a website link biorrw.github.io

icon location Fort Collins, CO icon location I'm a bioinformatician with a focus on building pipelines for use on HPC systems.

Results 9 comments of Reed Woyda

Error when setting up databases

Apologies for the late reply. Can you provide sequence #117637 in the "viral.merged.protein.faa.gz" file? There have been issues with mmseqs in the past where the fasta headers are incorrectly formatted:...

Error when setting up databases

Thank you for providing this information. This output, `invalid compressed data--format violated` hints at a problem with your `viral.merged.protein.faa.gz`. I suggest, as the file name hints at, re-merging the files....

DRAM database installation problem; The subcommand mmseqs createindex DRAM_data/uniref90.20240308.mmsdb DRAM_data/tmp --threads 10 experienced an error

Thank you for choosing to use DRAM. Unfortunately, at this time, we do not have the capacity to provide support for DRAM. We appreciate your understanding and encourage you to...

hmmpress not found during prepare_databases

Thank you for choosing to use DRAM. Unfortunately, at this time, we do not have the capacity to provide support for DRAM. We appreciate your understanding and encourage you to...

DRAM 1.5.0 installation issues

Thank you for choosing to use DRAM. Unfortunately, at this time, we do not have the capacity to provide support for DRAM. We appreciate your understanding and encourage you to...

problem about dramv-annotate

Thank you for choosing to use DRAM. Unfortunately, at this time, we do not have the capacity to provide support for DRAM. We appreciate your understanding and encourage you to...

Problem with database instalation (vog_latest_hmms.txt is empty)

Thank you for choosing to use DRAM. Unfortunately, at this time, we do not have the capacity to provide support for DRAM. We appreciate your understanding and encourage you to...

DRAM2 environment.yaml

Thank you for choosing to use DRAM. Unfortunately, at this time, we do not have the capacity to provide support for DRAM. We appreciate your understanding and encourage you to...

How long does populating step take?

Thank you for choosing to use DRAM. Unfortunately, at this time, we do not have the capacity to provide support for DRAM. We appreciate your understanding and encourage you to...