XAM.jl
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BioJulia
Parse and process SAM and BAM formatted files
Previously, the .data field of BAM records could have unused bytes near the end. This is acceptable, because the length of the actually used bytes is known from the fixed...
This is the first step towards improving the API and performance of XAM.jl. This PR is _not breaking_. It introduces a new data type representing BAM auxiliary data. When this...
This pull request changes the compat entry for the `GenomicFeatures` package from `2` to `2, 3`. This keeps the compat entries for earlier versions. Note: I have not tested your...
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This pull request changes the compat entry for the `Indexes` package from `0.1` to `0.1, 0.2`. This keeps the compat entries for earlier versions. Note: I have not tested your...
See also #24 and #25 . This is a work in progress. In particular, I will *first* change the BAM code and get that right, and then afterwards change the...
Hi, I run XAM follow your code with while loop but I got an eof error:  And I change to for loop it works fine:  How should I...
Sometimes,We want to iter bam according to the position not record. So do you have the plan to add the function.
Hi, Would it be possible to add `eachoverlap` such that it can be browsed by chromosome when the BAM is indexed ? ## Expected Behavior ``` chrom = "chr1" itr...
I would contend that Oneflow is a better branching model than Git Flow for Julia packages. [BioAlignments made the transition](https://github.com/BioJulia/BioAlignments.jl/issues/49) (albeit, a rocky one). What do others think?
See https://github.com/BioJulia/BioGenerics.jl/pull/14#issuecomment-1214068211. See https://github.com/BioJulia/FASTX.jl/pull/68/commits/c66d035e6dd34a87b865b31d86b3344b098045c0 for an implementation example.
