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BioContainers
Bioinformatics containers
Container for bamdst Repository: https://github.com/shiquan/bamdst If it helps, [I have detailed here](https://github.com/BioContainers/containers/issues/455#issuecomment-1207280478) in a conversation with @osallou how I built a container for myself. Having this in bioconda/biocontainers would be...
Repository: https://github.com/pepkit/eido Documentation: http://eido.databio.org/en/latest/ An open source tool used to validate and convert PEP format sample metadata against a schema.
Hi We are trying to adopt Biocontainers as much as possible for our workflows. In this regard, there are often questions/concerns about security if using Biocontainers. This is of particular...
Could I please get a container built for `r-clustree`, starting with **v0.4.4**. It is a visualisation package for showing trees in R. I would like to use this functionality in...
Container for GeneOCR UI UI for GeneOCR tool Repository: https://github.com/bedapub/geneocr-ui
Container for GeneOCR API API for GeneOCR tool Repostiory: https://github.com/bedapub/geneocr-api
Bumps [numpy](https://github.com/numpy/numpy) from 1.16.5 to 1.22.0. Release notes Sourced from numpy's releases. v1.22.0 NumPy 1.22.0 Release Notes NumPy 1.22.0 is a big release featuring the work of 153 contributors spread...
![dependabot[bot] avatar](https://avatars.githubusercontent.com/in/29110?v=4 "dependabot[bot] avatar"){kind=avatar}
Hi, We are starting to be issued with M1 macs at our institution and we are getting docker errors like: ``` docker: Error response from daemon: image with reference biocontainers/biocontainers:v1.2.0_cv1...
This page (https://biocontainers.pro/tools/gatk4) was last updated in Feb, 2022 and does not list the latest GATK versions. It shows the command to install gatk4:4.2.4.0--hdfd78af_0 and not the latest version. But...
Hi, We would like to report an error that happened with `http://quay.io/biocontainers/clair3:0.1.10--hdfd78af_0` but not with the author provided docker image `hkubal/clair3:v0.1-r10`. The error was reported at https://github.com/HKU-BAL/Clair3/issues/98. Much appreciated if...
