Bio-MingChen

Questions of Circle-Map Repeats and Realignment

1

I am new to eccDNA identification .After reading the two articles of Circle-Map and tutorials, I have some questions of using Repeats subcommand : Why Repeats need not to extract...

s[['pca']] <- CreateDimReducObject Calls ERROR: [[<- -> [[<- -> Key -> Key.Seurat -> vapply

2

I run demo script below and get the error ```R library(Seurat) s

Unable transfer h5ad to Seurat with unwanted ERROR,please help!

1

I generated h5ad by scanpy and I want to load it to R by SeuratDisk, but an unwanted Error happend which is shown below , any idea to solve this...

Size factor of CellAssign

1

Directly compute size factor by sum of each cell's expression( through `adata.obs["size_factor"] = adata.X.sum(1)`) will lead to wrong celltype assignemnt when I recently run cellassign example by scvi-tools https://docs.scvi-tools.org/en/stable/user_guide/notebooks/cellassign_tutorial.html. The...