Hongbin Liu

Thanks for your reply and kind help! I also could not open the https://foldseek.steineggerlab.workers.dev/pdb100.tar.gz with the edge browser. I think it might because of the network barrier in my country....

Great! Thanks for your explanation!

Should this analysis be completed in the clusters one by one using a loop script?

That's really a nice function! So I would not get a table containing genera (or higher taxonomic level) with same name if I use the _get_taxadf_ function, right? I just...

Yes! The full taxonomic information could be obtained through the _phyloseq::tax_table(ps)_ dunction, but I'm not sure whether the _phyloseq::tax_table(ps)_ have a similar function like _fillNAtax_. Through _tax_table_, I think I'll...

Great! The development version solves my problem perfectly! Thanks!

Yes, you were right! I used the relative abundance pathway data (_ps_xx

Thanks for your help! I've save the ps object and sent it to your email [email protected] !

Thanks so much for your help! This method solves my issue perfectly! Cheers!

Yeah, you were right! I just tried the test script here https://mp.weixin.qq.com/s/iHcQpKs5Jo28Q_FiAzdTuw. The parameter should be classgroup, but not class. Thanks!