napari-clusters-plotter
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BiAPoL
A napari plugin for clustering objects according to their properties.
Just an idea for a new feature: I could be cool to have the marginal distributions/histogram for each feature in the plot. Something like shown here: https://matplotlib.org/stable/gallery/lines_bars_and_markers/scatter_hist.html 
If [fast-hdbscan](https://github.com/TutteInstitute/fast_hdbscan) works for our purposes (worth exploring), we could replace hdbscan. We can also make it an optional dependency.
In napari-clusters-plotter 0.7.0 the labels layer's `opacity` is set to 0 at some point. It appears empty and a new user might be confused. Instead of setting its opacity, I...
Hi everyone, As some of us discussed, it would be great to use the infra-structure of this plugin to display and cluster tracking features! 🚀 It appears there is support...
Expected behaviour: when clicked on anywhere in the plot, the plot should be reset to the one without any visualized clusters. https://user-images.githubusercontent.com/52177660/226913461-8b0e2dfd-5790-4402-8650-004a59004715.mp4
For the 2D histogram in the plotter, it would be nice to allow users to, besides manually or Freedman–Diaconis rule, select from different number of bins methods. This could potentially...
For small data, auto-updates would make usability much better. For large data, this is not desirable. An auto-update checkbox could be added so that the user chooses it depending on...
Hi, I was just testing some things and noticed that the UMAP was not functional in a fresh devbio-napari installation. ## To reproduce I create some sample data with this...
Hi - thanks for the plugin - looks great! I've just started looking at this for displaying the features on labels (passed into `napari` as a dataframe using the `features`...
